I am trying to use Augustus. However I keep getting the error:
Possibly "scipio" is not installed or not in your PATH at autoAugTrain.pl line 826.
I have seen blat working and scipio.pl running as it has given me a .yaml file. The scipio.err file:
Warning: Query sequences contain gaps and/or premature stopcodons. It will be necessary to remove them if blat is run separately! This is a bug and shouldn't happen. Please report.
Can someone please help?