Question: Comparing two HMM profiles
0
gravatar for kk1990
17 months ago by
kk19900
Island
kk19900 wrote:

Hi!

I have several HMM profiles of proteins generated from alignments using hmmbuild from hmmer package. How can I compare each vs. each?

Thank you in advance

hmmer hmm sequence alignment • 741 views
ADD COMMENTlink modified 17 months ago by Jean-Karim Heriche14k • written 17 months ago by kk19900
0
gravatar for Jean-Karim Heriche
17 months ago by
EMBL Heidelberg, Germany
Jean-Karim Heriche14k wrote:

The Kullback-Leibler distance has often been used to compare HMMs but there are a number of other measures e.g. this paper or this one.

ADD COMMENTlink written 17 months ago by Jean-Karim Heriche14k
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