Question: Comparing two HMM profiles
0
gravatar for kk1990
21 months ago by
kk19900
Island
kk19900 wrote:

Hi!

I have several HMM profiles of proteins generated from alignments using hmmbuild from hmmer package. How can I compare each vs. each?

Thank you in advance

hmmer hmm sequence alignment • 972 views
ADD COMMENTlink modified 4 weeks ago by Biostar ♦♦ 20 • written 21 months ago by kk19900
1
gravatar for Jean-Karim Heriche
21 months ago by
EMBL Heidelberg, Germany
Jean-Karim Heriche15k wrote:

The Kullback-Leibler distance has often been used to compare HMMs but there are a number of other measures e.g. this paper or this one.

ADD COMMENTlink written 21 months ago by Jean-Karim Heriche15k
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