Question: Comparing two HMM profiles
gravatar for kk1990
3.9 years ago by
kk199010 wrote:


I have several HMM profiles of proteins generated from alignments using hmmbuild from hmmer package. How can I compare each vs. each?

Thank you in advance

hmmer hmm sequence alignment • 2.3k views
ADD COMMENTlink modified 2.2 years ago by Biostar ♦♦ 20 • written 3.9 years ago by kk199010
gravatar for Jean-Karim Heriche
3.9 years ago by
EMBL Heidelberg, Germany
Jean-Karim Heriche23k wrote:

The Kullback-Leibler distance has often been used to compare HMMs but there are a number of other measures e.g. this paper or this one.

ADD COMMENTlink written 3.9 years ago by Jean-Karim Heriche23k
Please log in to add an answer.


Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1533 users visited in the last hour