Question: Comparing two HMM profiles
gravatar for kk1990
3.0 years ago by
kk19900 wrote:


I have several HMM profiles of proteins generated from alignments using hmmbuild from hmmer package. How can I compare each vs. each?

Thank you in advance

hmmer hmm sequence alignment • 1.8k views
ADD COMMENTlink modified 16 months ago by Biostar ♦♦ 20 • written 3.0 years ago by kk19900
gravatar for Jean-Karim Heriche
3.0 years ago by
EMBL Heidelberg, Germany
Jean-Karim Heriche20k wrote:

The Kullback-Leibler distance has often been used to compare HMMs but there are a number of other measures e.g. this paper or this one.

ADD COMMENTlink written 3.0 years ago by Jean-Karim Heriche20k
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