Question: Comparing two HMM profiles
0
gravatar for kk1990
3.9 years ago by
kk199010
Island
kk199010 wrote:

Hi!

I have several HMM profiles of proteins generated from alignments using hmmbuild from hmmer package. How can I compare each vs. each?

Thank you in advance

hmmer hmm sequence alignment • 2.3k views
ADD COMMENTlink modified 2.2 years ago by Biostar ♦♦ 20 • written 3.9 years ago by kk199010
2
gravatar for Jean-Karim Heriche
3.9 years ago by
EMBL Heidelberg, Germany
Jean-Karim Heriche23k wrote:

The Kullback-Leibler distance has often been used to compare HMMs but there are a number of other measures e.g. this paper or this one.

ADD COMMENTlink written 3.9 years ago by Jean-Karim Heriche23k
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