Question: wigcorrelate: what is a good correlation coefficient?
1
gravatar for apnri
3.8 years ago by
apnri40
apnri40 wrote:

To test consistency between replicates - I use wigcorrelate (after calling peaks with macs2 for TF). wigcorrelate outputs pearson correlation coefficient, although, it does not give any estimate of significance. My replicates give correlation coefficient of 0.277. Is there a way to figure out if this is significant?

ADD COMMENTlink modified 3.8 years ago by natasha.sernova3.7k • written 3.8 years ago by apnri40
0
gravatar for natasha.sernova
3.8 years ago by
natasha.sernova3.7k
natasha.sernova3.7k wrote:

What is your sample size?

Having this information you will be able to estimate significance

ADD COMMENTlink written 3.8 years ago by natasha.sernova3.7k
1

That's the thing, since this is Chip-Seq data and I am testing consistency between two replicates. Not sure what would count as sample size

ADD REPLYlink modified 3.8 years ago • written 3.8 years ago by apnri40
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