Hello, I aim to run deeptools computeMatrix -reference-point with settings that I've used multiple times for different data sets. Still, in this case, I get the following error:
Traceback (most recent call last): File "/Users/atoenges/anaconda/bin/computeMatrix", line 7, in <module> main() File "/Users/atoenges/anaconda/lib/python2.7/site-packages/deeptools/computeMatrix.py", line 378, in main hm.computeMatrix(scores_file_list, args.regionsFileName, parameters, blackListFileName=args.blackListFileName, verbose=args.verbose, allArgs=args) File "/Users/atoenges/anaconda/lib/python2.7/site-packages/deeptools/heatmapper.py", line 247, in computeMatrix keepExons=keepExons) File "/Users/atoenges/anaconda/lib/python2.7/site-packages/deeptools/mapReduce.py", line 142, in mapReduce res = pool.map_async(func, TASKS).get(9999999) File "/Users/atoenges/anaconda/lib/python2.7/multiprocessing/pool.py", line 567, in get raise self._value IndexError: list index out of range
I noticed then that it did not occur when I removed all entries from the bed file that belong to chr1. Initially, I suspected that the some chr1 entries contain out-of-bounds ranges, but when I checked both the maximum of the end coordinates in the bed and the max in the bigwig, all ranges were in-bounds.
Any suggestions would be appreciated.