Question: Lollipop Plot of Variant Locations
gravatar for angrypigeon
2.6 years ago by
angrypigeon120 wrote:

I am doing amplicon sequencing, so i'm only probing particular regions of the human genome 150bp at a time. I would like to know and display where my variants are coming from within my amplicons.

So for instance if my first amplicon spans chr1:100-200 is there a good way to plot this region out and display where each variant in my vcf files are located along this 100bp segment?

I have seen lollipop plots in the past that essentially do this but I'm not sure how to implement this in R.

sequencing R • 1.5k views
ADD COMMENTlink modified 2.6 years ago by igor7.6k • written 2.6 years ago by angrypigeon120
gravatar for igor
2.6 years ago by
United States
igor7.6k wrote:

Some great suggestions here: How To Create Mutation Diagram In R Or In Any Tools?

ADD COMMENTlink written 2.6 years ago by igor7.6k
Please log in to add an answer.


Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1070 users visited in the last hour