Question: Lollipop Plot of Variant Locations
0
gravatar for L. A. Liggett
3.3 years ago by
L. A. Liggett120
Broad Institute, Harvard Medical School, Boston Children's
L. A. Liggett120 wrote:

I am doing amplicon sequencing, so i'm only probing particular regions of the human genome 150bp at a time. I would like to know and display where my variants are coming from within my amplicons.

So for instance if my first amplicon spans chr1:100-200 is there a good way to plot this region out and display where each variant in my vcf files are located along this 100bp segment?

I have seen lollipop plots in the past that essentially do this but I'm not sure how to implement this in R.

sequencing R • 2.0k views
ADD COMMENTlink modified 3.3 years ago by igor9.2k • written 3.3 years ago by L. A. Liggett120
0
gravatar for igor
3.3 years ago by
igor9.2k
United States
igor9.2k wrote:

Some great suggestions here: How To Create Mutation Diagram In R Or In Any Tools?

ADD COMMENTlink written 3.3 years ago by igor9.2k
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