Identifiy new miRNA
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7.7 years ago

Hi everybody I am looking for the informatics tool to identify new miRNA that associated with specific cancer by use the previous known miRNA found in different expression in that cancer?

which tool could I use for example to build a model than scan that model against the database to pick up based in sequence information?

Anyone have advise for that idea thanks

sequence • 1.5k views
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Please use a more informative title for your posts and follow up on your earlier questions!

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Hi WouterDeCoster

like what information do you need

Thanks

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1) The title of your post contains just "need the approach": be more informative. People browsing this forum need to know what your post is about by the title.

2) You have asked a few question already, on which many people have contributed to help you. It's only fair that you up vote helpful answers and mark a post as accepted if the answer resolved your question.

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Dear WouterDeCoster

Really sorry

I do not put the question in right format or less informative. I have collect miRNA that linked to one cancer. I was planing to use HMMER to build model then predict new miRNA related to same cancer . Since HMMER is not recommended for nucleotide so I hope to find tool that could do predication by use the known sequence of miRNA.

THANKS

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You asked a similar question here . Was it not answered??

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Dear Prasad

Really sorry

I do not put the question in right format or less informative. I have collect miRNA that linked to one cancer. I was planing to use HMMER to build model then predict new miRNA related to same cancer . Since HMMER is not recommended for nucleotide so I hope to find tool that could do predication by use the known sequence of miRNA.

THANKS

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