Question: Finding downstream Gene Closest To A Given Location
0
gravatar for PAn
15 months ago by
PAn20
United States
PAn20 wrote:

Hi,

I am trying to find genes closest only downstream to a bed file. I am using

bedtools closest -d  -a Seq.bed -b Bed_GTF_neg.bed

but it is giving me both upstream and downstream regions, is there anyway to get only the downstream regions?

Thanks!

closest bedfile gene bedtools • 692 views
ADD COMMENTlink modified 15 months ago by harold.smith.tarheel4.0k • written 15 months ago by PAn20
3
gravatar for harold.smith.tarheel
15 months ago by
United States
harold.smith.tarheel4.0k wrote:

From the BEDtools 'closest' webpage:

-iu = ignore upstream

ADD COMMENTlink written 15 months ago by harold.smith.tarheel4.0k
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 879 users visited in the last hour