Question: MLSeq package error
gravatar for jonessara770
2.9 years ago by
jonessara770170 wrote:


I would like to use MLSeq package but I am getting this error.

> library(MLSeq)
Error : object ‘bag.default’ is not exported by 'namespace:caret'
Error: package or namespace load failed for ‘MLSeq’

would you please help me to overcome this error?



> sessionInfo()
R version 3.3.1 (2016-06-21)
Platform: x86_64-apple-darwin13.4.0 (64-bit)
Running under: OS X 10.12.1 (Sierra)

[1] en_CA.UTF-8/en_CA.UTF-8/en_CA.UTF-8/C/en_CA.UTF-8/en_CA.UTF-8

attached base packages:
[1] parallel  stats4    stats     graphics  grDevices utils     datasets  methods   base     

other attached packages:
 [1] edgeR_3.14.0               randomForest_4.6-12        limma_3.28.21              DESeq2_1.12.4              SummarizedExperiment_1.2.3 Biobase_2.32.0             GenomicRanges_1.24.3      
 [8] GenomeInfoDb_1.8.7         IRanges_2.6.1              S4Vectors_0.10.3           BiocGenerics_0.18.0        caret_6.0-72               ggplot2_2.1.0              lattice_0.20-34           

loaded via a namespace (and not attached):
 [1] Rcpp_0.12.7          locfit_1.5-9.1       digest_0.6.10        foreach_1.4.3        plyr_1.8.4           chron_2.3-47         acepack_1.4.1        MatrixModels_0.4-1   RSQLite_1.0.0       
[10] zlibbioc_1.18.0      minqa_1.2.4          data.table_1.9.6     annotate_1.50.1      SparseM_1.72         car_2.1-3            nloptr_1.0.4         rpart_4.1-10         Matrix_1.2-7.1      
[19] splines_3.3.1        lme4_1.1-12          BiocParallel_1.6.6   geneplotter_1.50.0   stringr_1.1.0        foreign_0.8-67       RCurl_1.95-4.8       munsell_0.4.3        mgcv_1.8-15         
[28] htmltools_0.3.5      nnet_7.3-12          gridExtra_2.2.1      htmlTable_1.7        Hmisc_4.0-0          codetools_0.2-15     XML_3.98-1.4         MASS_7.3-45          bitops_1.0-6        
[37] ModelMetrics_1.1.0   grid_3.3.1           nlme_3.1-128         xtable_1.8-2         gtable_0.2.0         DBI_0.5-1            magrittr_1.5         scales_0.4.0         stringi_1.1.2       
[46] XVector_0.12.1       reshape2_1.4.2       genefilter_1.54.2    latticeExtra_0.6-28  Formula_1.2-1        RColorBrewer_1.1-2   iterators_1.0.8      tools_3.3.1          pbkrtest_0.4-6      
[55] survival_2.40-1      AnnotationDbi_1.34.4 colorspace_1.2-7     cluster_2.0.5        knitr_1.14           quantreg_5.29
rna-seq • 899 views
ADD COMMENTlink modified 2.9 years ago by gokmen.zararsiz0 • written 2.9 years ago by jonessara770170
gravatar for gokmen.zararsiz
2.9 years ago by
gokmen.zararsiz0 wrote:

The error arises from importing "bag.default" function in caret. NAMESPACE is fixed in the development version 1.15.1. You can download the source files from With the upcoming version 1.16.0, namespace error will be fixed in the released version.

ADD COMMENTlink written 2.9 years ago by gokmen.zararsiz0
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