Question: TARGET Pediatric Cancer Code Table
1
gravatar for komal.rathi
2.5 years ago by
komal.rathi3.4k
Children's Hospital of Philadelphia, Philadelphia, PA
komal.rathi3.4k wrote:

Hello everyone,

I have a bunch of TARGET samples but the associated annotation lacks the tissue information i.e. whether it is a Primary tumor or Recurrent etc. I know the value for a couple codes like 01 stands for Primary solid tumors, but I want to define the tissue type for every code for future references. Does anybody know where I can find the TARGET code table to interpret the codes?

TARGET_10 (Blood Derived Normal)
TARGET_14 (Bone Marrow Normal)
TARGET_11 (Solid Tissue Normal)
TARGET_01 (Primary Solid Tumor)
TARGET_09 (Primary Blood Derived Cancer - Bone Marrow)
TARGET_03 (Primary Blood Derived Cancer - Peripheral Blood)
TARGET_04 (Recurrent Blood Derived Cancer - Bone Marrow)
TARGET_02 (Recurrent Solid Tumor)
TARGET_40 (Recurrent Blood Derived Cancer - Peripheral Blood)
TARGET_06 (Metastatic)
TARGET_41 (Blood Derived Cancer - Bone Marrow, Post-treatment)
TARGET_42 (Blood Derived Cancer - Peripheral Blood, Post-treatment)
TARGET_13 (EBV Immortalized Normal)
TARGET_15 (sample type 15)
TARGET_60 (Primary Xenograft Tissue)
TARGET_50 (Cell Lines)
TARGET_61 (Cell Line Derived Xenograft Tissue)
TARGET_20 (Control Analyte)

Thanks!

UPDATE: I have updated the code table based on @khericlim's response.

target code • 918 views
ADD COMMENTlink modified 2.5 years ago • written 2.5 years ago by komal.rathi3.4k
2
gravatar for Eric Lim
2.5 years ago by
Eric Lim1.3k
Boston
Eric Lim1.3k wrote:

Hey Komal, how are you? Say hi to Pichai!

The TCGA one was gone, but this should help.

https://gdc.cancer.gov/resources-tcga-users/tcga-code-tables/sample-type-codes

ADD COMMENTlink written 2.5 years ago by Eric Lim1.3k

Eric! Thank you so much!! That completes my code table! Will put it up on our github as well :)

ADD REPLYlink written 2.5 years ago by komal.rathi3.4k
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