I am trying to use the CIRCexplorer2 pipeline to process some paired-end RNAseq data. I have having difficulty with the tophat-fusion step.
The error message reads:
[2016-11-04 13:01:43] Searching for junctions via segment mapping [FAILED]
Error: segment-based junction search failed with err =-6 Reason: image not found
I am not sure what this means. Any help would be greatly appreciated!