I am new in pink, my problem is convert my data for bed file,
my dat form is ID AA AB AA BB ... about 20000, I haven't FID,MID, SEX
I want the form ID A A A B B B.
please write me linux command
What should happen to indels? Or is this from a SNP array?
What should happen to missing genotypes?
In addition, what have you tried? It's good practice to first show us what you tried and how far you got.
I add space with R program but can't split using splitstackshope in plink when using compound genotype in last command line. I see following error
"Problem with compound genotype [ B.B.1 ] should be two characters long"
Please use ADD REPLY to answer to earlier posts, as such this thread remains logically structured and easy to follow.
In addition, I have no idea what splitstackshope is and what your error exactly means.