Question: How to use biRte package?
0
gravatar for mcrayyu
2.4 years ago by
mcrayyu0
mcrayyu0 wrote:

Hi there , recently I want to use birte package (http://bioconductor.org/packages/release/bioc/html/birte.html) to analysis my own data , but with no luck I suffered some errors such as below:

Here is the R command:

mRNA_result = birteLimma(dat.mRNA=mydat, limmamRNA=limmamRNA, affinities=affinities2,niter=500, nburnin=5000, thin=1)

And the error shows:

Automatic assignement of #replicates with design matrix (mRNA data). Formatting regulator-target network -> checking overlap between network and measurements. --> biRte tries to explain mRNA log fold changes TF Calculating potential swaps for regulator type TF miRNA Calculating potential swaps for regulator type miRNA Error in fitdistr(1/mRNA.Sigma^2, "gamma") : 'x' must be a non-empty numeric vector

anyone can help ? Thank you a lot

ADD COMMENTlink modified 2.3 years ago by Biostar ♦♦ 20 • written 2.4 years ago by mcrayyu0

As far as the error message goes

Error in fitdistr(1/mRNA.Sigma^2, "gamma") : 'x' must be a non-empty numeric vector

You might be using a wrong input (probably mydat). The input must be a vector and it must be numeric

ADD REPLYlink written 2.4 years ago by Santosh Anand4.7k
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 844 users visited in the last hour