Question: outside mothur: remove pre-clusters associated with negative control from all groups: bash commands?
gravatar for careymsuehs
3.5 years ago by
careymsuehs0 wrote:

Hi. I've been using the miseq mothur pipeline. After pre-clustering I would like to remove negative-control-associated preclusters from all groups/samples. I'm looking for any help in creating the bash commands that would allow this. I'm very new to bash and looking at sed, would appreciate any help and pointers from the community.

ADD COMMENTlink written 3.5 years ago by careymsuehs0

The Q is too specific to the field. It would be more useful if you summarize the inputs and the output that you are expecting to get using bash.

ADD REPLYlink written 3.5 years ago by Santosh Anand5.1k
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