Question: How do I count the number of cell types in which a given gene is expressed?
0
gravatar for spacemorrissey
3.1 years ago by
United States
spacemorrissey230 wrote:

Does anyone know how to count the number of cell types in which a given gene is expressed? For either human or mouse, if I have a gene of interest I can go to biogps or the human protein atlas, and get a little bit of a feel for how commonly a gene is expressed, but if I wanted to get the number of tissues in which every gene is expressed, how should I go about it?

rna-seq • 725 views
ADD COMMENTlink modified 16 months ago by Biostar ♦♦ 20 • written 3.1 years ago by spacemorrissey230
0
gravatar for Charles Plessy
3.1 years ago by
Charles Plessy2.7k
Japan
Charles Plessy2.7k wrote:

To get a feel on how broadly a gene is expressed (in human or mouse), you can have a look at the FANTOM5 expression atlas.

ADD COMMENTlink modified 3.1 years ago • written 3.1 years ago by Charles Plessy2.7k

Hello, your link does not work. Also I know several places to look up the expression of 1 gene across tissues. I want to set a threshold and make an expressed not expressed call for every gene in every tissue.

ADD REPLYlink written 3.1 years ago by spacemorrissey230

Link repaired, sorry for the inconvenience.

ADD REPLYlink written 3.1 years ago by Charles Plessy2.7k
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1250 users visited in the last hour