Entering edit mode
7.9 years ago
aidpranculis
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0
There are a lot of tools out there to annotate variation and get allele frequencies from different project data, but can anyone suggest a method (not a browser) or a tool to get genotype frequencies/counts for variants from projects like 1000g, UK10k or aggregation consortia like gnomAD and Kaviar?
ANNOVAR should be able to get you the minor allele frequency from the studies that are part of its database
true, but i am looking for genotype frequencies
My apologies I missed that some how.
True I can think of no annotator that spits out genotype frequencies.