Entering edit mode
7.5 years ago
dramitr.sahu
•
0
Hi all, i am running the command to trim my fastq sequence.
my command is " perl prinseq-lite.pl test.fastq -out_format 5 -min_len 50 -mean_qual_score 25 ". this will give me 5 number of files and i took the screenshot after running the command. this gave me number of good reads, number of bad reads, mean quality etc. i forgot to take screenshot. so my question is how to obtain that information without running prinseq-lit again.
please suggest me a way out. thanks in advance.
There is no way to re-capture something that got printed to STDOUT (screen) and is long gone. Check this for ways of re-directing STDOUT output to a log file when you re-run prinseq.