Question: how to get reports of prinseq lite after running the prinseq-lite ?
0
gravatar for dramitr.sahu
2.4 years ago by
dramitr.sahu0 wrote:

Hi all, i am running the command to trim my fastq sequence.

my command is " perl prinseq-lite.pl test.fastq -out_format 5 -min_len 50 -mean_qual_score 25 ". this will give me 5 number of files and i took the screenshot after running the command. this gave me number of good reads, number of bad reads, mean quality etc. i forgot to take screenshot. so my question is how to obtain that information without running prinseq-lit again.

please suggest me a way out. thanks in advance.

rna-seq • 911 views
ADD COMMENTlink written 2.4 years ago by dramitr.sahu0

There is no way to re-capture something that got printed to STDOUT (screen) and is long gone. Check this for ways of re-directing STDOUT output to a log file when you re-run prinseq.

ADD REPLYlink modified 2.4 years ago • written 2.4 years ago by genomax65k
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1628 users visited in the last hour