Question: how to get reports of prinseq lite after running the prinseq-lite ?
gravatar for dramitr.sahu
2.9 years ago by
dramitr.sahu0 wrote:

Hi all, i am running the command to trim my fastq sequence.

my command is " perl test.fastq -out_format 5 -min_len 50 -mean_qual_score 25 ". this will give me 5 number of files and i took the screenshot after running the command. this gave me number of good reads, number of bad reads, mean quality etc. i forgot to take screenshot. so my question is how to obtain that information without running prinseq-lit again.

please suggest me a way out. thanks in advance.

rna-seq • 1.1k views
ADD COMMENTlink written 2.9 years ago by dramitr.sahu0

There is no way to re-capture something that got printed to STDOUT (screen) and is long gone. Check this for ways of re-directing STDOUT output to a log file when you re-run prinseq.

ADD REPLYlink modified 2.9 years ago • written 2.9 years ago by genomax73k
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