Question: Rsamtools to separate vcf file by chromosome?
gravatar for nadrianam
19 months ago by
nadrianam30 wrote:

I'm using Rsamtools to try and separate a vcf file by chromosome and while there are plenty of questions answered using samtools/vcftools/etc, I can't seem to adapt them to work in R. (I'm using Windows so I'm stuck to using R). I also have Rbamtools but that doesn't seem to have a split function.

Ideally I need this to loop as well.

Thanks in advance!

chromosome rsamtools vcf • 554 views
ADD COMMENTlink written 19 months ago by nadrianam30

It's good practice to show us what you tried, what didn't work and how it didn't work :)

ADD REPLYlink written 19 months ago by WouterDeCoster29k
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