Entering edit mode
7.4 years ago
nadrianam
▴
40
I'm using Rsamtools to try and separate a vcf file by chromosome and while there are plenty of questions answered using samtools/vcftools/etc, I can't seem to adapt them to work in R. (I'm using Windows so I'm stuck to using R). I also have Rbamtools but that doesn't seem to have a split function.
Ideally I need this to loop as well.
Thanks in advance!
It's good practice to show us what you tried, what didn't work and how it didn't work :)