Comparing 2 sequences at different threshold
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9.0 years ago
thdurant • 0

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If I understand the question right, for that high a % sequence identity one of the sequences needs to be actually identical at that level.

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This question doesn't completely make sense, you need to think this through before coding. Because those sequences are also 1/9 identical if you compare them the other way around. Perhaps you want to look at things like the levenshtein distance (for which easy python implementations exist, even a package. If you decide to use that you don't have to code a lot, but you need to make sure you understand what's going on.)

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