I have a genotype data as a matrix of 10 samples (columns) and 560 000 SNPs (raws). I want to convert this data for further analysis , but have not MAP and PED file (PLINK format) to use GenABEL and I don't know any ways to do this conversion.
Here's a few rows and columns to show you what it looks like:
S1 S2 S3 S4 S5 rs75406208 CC CC CG CG NA rs200142685 AG AG GG GG GG rs369829527 NA NA GG GG GG rs76412254 GG GG GG GG GG rs80033621 AA AA AA AA AA rs62608737 GG GG GG GG GG rs373506129 NA NA CC CC CC
Does anyone know any way to do it?
Thanks in advance.