Can we get gene information (such as gene HUGO symbol, molecular consequences, gene RefSeq Id) for a given rsID using ncbi eutils?
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4.8 years ago
burcakotlu ▴ 40

Dear all,

Can we get gene information (such as gene HUGO symbol, molecular consequences, gene RefSeq Id) for a given rsID using ncbi eutils?

For example, for rs760076932, can we get the following information? RNF130, intron variant

Thanks in advance, Bur├žak Otlu

rsID gene symbol gene Refseq ID ncbi eutils • 1.2k views
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I don't know about eutils, but you can convert the rs ID to a vcf file (using e.g. dbSNP batch converter) and use a tool such as variant effect predictor (VEP), snpeff or similar to get the desired information.

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