Question: Gene regulatory network visualization and annotation
0
gravatar for morteza.mahmoudisaber
20 months ago by
Japan
morteza.mahmoudisaber50 wrote:

Analyzing Microarray data, I obtained a group of deferentially expressed genes and now I want to identify the gene regulatory networks in which these genes are over-represented, visualize these networks and annotate the networks.

As I searched, it seems that Cytoscape is the best software for this end, however, the tutorial for the software (version 3.4.0) did not addressed this issue so I was wondering if anyone could help me to figure this out.

ADD COMMENTlink modified 14 months ago by Biostar ♦♦ 20 • written 20 months ago by morteza.mahmoudisaber50
1
gravatar for spacemorrissey
20 months ago by
United States
spacemorrissey190 wrote:

I am not sure exactly what you are trying to do, but it seems that Reactome may suit your needs. http://www.reactome.org/

ADD COMMENTlink written 20 months ago by spacemorrissey190

@ spacemorrissey: Thank you. Reactome is exactly what I needed.

ADD REPLYlink modified 20 months ago • written 20 months ago by morteza.mahmoudisaber50
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 633 users visited in the last hour