Question: Gene regulatory network visualization and annotation
0
gravatar for morteza.mahmoudisaber
2.1 years ago by
Japan
morteza.mahmoudisaber70 wrote:

Analyzing Microarray data, I obtained a group of deferentially expressed genes and now I want to identify the gene regulatory networks in which these genes are over-represented, visualize these networks and annotate the networks.

As I searched, it seems that Cytoscape is the best software for this end, however, the tutorial for the software (version 3.4.0) did not addressed this issue so I was wondering if anyone could help me to figure this out.

ADD COMMENTlink modified 19 months ago by Biostar ♦♦ 20 • written 2.1 years ago by morteza.mahmoudisaber70
1
gravatar for spacemorrissey
2.1 years ago by
United States
spacemorrissey200 wrote:

I am not sure exactly what you are trying to do, but it seems that Reactome may suit your needs. http://www.reactome.org/

ADD COMMENTlink written 2.1 years ago by spacemorrissey200

@ spacemorrissey: Thank you. Reactome is exactly what I needed.

ADD REPLYlink modified 2.1 years ago • written 2.1 years ago by morteza.mahmoudisaber70
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