Question: Gene regulatory network visualization and annotation
gravatar for morteza.mahmoudisaber
3.8 years ago by
morteza.mahmoudisaber70 wrote:

Analyzing Microarray data, I obtained a group of deferentially expressed genes and now I want to identify the gene regulatory networks in which these genes are over-represented, visualize these networks and annotate the networks.

As I searched, it seems that Cytoscape is the best software for this end, however, the tutorial for the software (version 3.4.0) did not addressed this issue so I was wondering if anyone could help me to figure this out.

ADD COMMENTlink modified 3.3 years ago by Biostar ♦♦ 20 • written 3.8 years ago by morteza.mahmoudisaber70
gravatar for spacemorrissey
3.8 years ago by
United States
spacemorrissey240 wrote:

I am not sure exactly what you are trying to do, but it seems that Reactome may suit your needs.

ADD COMMENTlink written 3.8 years ago by spacemorrissey240

@ spacemorrissey: Thank you. Reactome is exactly what I needed.

ADD REPLYlink modified 3.8 years ago • written 3.8 years ago by morteza.mahmoudisaber70
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