Question: Gene regulatory network visualization and annotation
gravatar for morteza.mahmoudisaber
20 months ago by
morteza.mahmoudisaber50 wrote:

Analyzing Microarray data, I obtained a group of deferentially expressed genes and now I want to identify the gene regulatory networks in which these genes are over-represented, visualize these networks and annotate the networks.

As I searched, it seems that Cytoscape is the best software for this end, however, the tutorial for the software (version 3.4.0) did not addressed this issue so I was wondering if anyone could help me to figure this out.

ADD COMMENTlink modified 14 months ago by Biostar ♦♦ 20 • written 20 months ago by morteza.mahmoudisaber50
gravatar for spacemorrissey
20 months ago by
United States
spacemorrissey190 wrote:

I am not sure exactly what you are trying to do, but it seems that Reactome may suit your needs.

ADD COMMENTlink written 20 months ago by spacemorrissey190

@ spacemorrissey: Thank you. Reactome is exactly what I needed.

ADD REPLYlink modified 20 months ago • written 20 months ago by morteza.mahmoudisaber50
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