Question: TCGA: how to download matched normal and tumor samples from TCGA website.
0
gravatar for morrovvatim60
15 months ago by
morrovvatim600 wrote:

Hi all I want to download those samples from TCGA website, which have both gene expression and miRNA expression data from both tumor and normal tissues ( matched normal and tumor samples) . If a case only has the tumor sample, I want to filter it out. But I didn't find any tags or conditions to do that. Could anyone help me? Thanks in advance.

rna-seq • 2.3k views
ADD COMMENTlink modified 15 months ago by TriS3.2k • written 15 months ago by morrovvatim600
2
gravatar for TriS
15 months ago by
TriS3.2k
United States, Buffalo
TriS3.2k wrote:

you can use firehose: https://gdac.broadinstitute.org/

find which ones are normal/tumor from the TCGA barcode https://wiki.nci.nih.gov/display/TCGA/TCGA+barcode

ADD COMMENTlink written 15 months ago by TriS3.2k
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