Question: What are all the different methods available for identifying the DEG?
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gravatar for mathavanbioinfo
2.8 years ago by
India
mathavanbioinfo50 wrote:

Dear All,

I am working on Micro-array data analysis with this GEO acc no. GSE31747, In this paper PMID 22024983 (https://www.ncbi.nlm.nih.gov/pubmed/22028943) they have used ANOVA method to identify the significant genes,Now i am trying to compare their results with Limma package but i am not getting any single significant genes(P-Value<0.05 ). So can any one tell me if Limma not give any significant genes what else other methods i can go.

By

Mathavan M

Research Scholar Centre for Bioinformatics

Pondicherry University

mathavanbioinfo@gmail.com

limma microarray • 750 views
ADD COMMENTlink written 2.8 years ago by mathavanbioinfo50

There can be multiple things that could go wrong. Before comparing with other methods, first did you replicate their results with ANOVA ?

ADD REPLYlink written 2.8 years ago by geek_y9.9k
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