Question: (Closed) What software can determine Tuberculosis genome lineage?
0
gravatar for lukdubkvas
2.3 years ago by
lukdubkvas0
lukdubkvas0 wrote:

What software can determine Tuberculosis genome lineage? I tried Mykrobe Predictor only. Is there any other alternative?

lineage genome • 650 views
ADD COMMENTlink modified 2.3 years ago by natasha.sernova3.4k • written 2.3 years ago by lukdubkvas0

Hello lukdubkvas!

We believe that this post does not fit the main topic of this site.

Not a real question

For this reason we have closed your question. This allows us to keep the site focused on the topics that the community can help with.

If you disagree please tell us why in a reply below, we'll be happy to talk about it.

Cheers!

ADD REPLYlink written 2.3 years ago by Michael Dondrup46k
1
gravatar for natasha.sernova
2.3 years ago by
natasha.sernova3.4k
natasha.sernova3.4k wrote:

See this site:

http://tbinsight.cs.rpi.edu/run_tb_lineage.html

See these articles:

TB-Lineage: an online tool for classification and analysis of strains of Mycobacterium tuberculosis complex.

https://www.ncbi.nlm.nih.gov/pubmed/22406225

PhyResSE: a Web Tool Delineating Mycobacterium tuberculosis Antibiotic Resistance and Lineage from Whole-Genome Sequencing Data

http://jcm.asm.org/content/53/6/1908.full

TGS-TB: Total Genotyping Solution for Mycobacterium tuberculosis Using Short-Read Whole-Genome Sequencing

http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0142951

Genomic epidemiology of Lineage 4 Mycobacterium tuberculosis subpopulations in New York city and New Jersey, 1999–2009

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5117616/

PolyTB: A genomic variation map for Mycobacterium tuberculosis

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4066953/

Construction of a virtual Mycobacterium tuberculosis consensus genome and its application to data from a next generation sequencer

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4425900/

Genomic characterization of Mycobacterium tuberculosis lineage 7 and a proposed name: ‘Aethiops vetus’

http://mgen.microbiologyresearch.org/content/journal/mgen/10.1099/mgen.0.000063

And there are much more, unfortunately...

ADD COMMENTlink modified 2.3 years ago • written 2.3 years ago by natasha.sernova3.4k

thank you +++++++++++

ADD REPLYlink written 2.3 years ago by lukdubkvas0
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