Question: error in convert srt to fastq
gravatar for mra8187
3.4 years ago by
mra818720 wrote:

Dear all when i try to convert srt to fastq see this error .. what can i do ? (i Command Prompt in windows 10)

G:\africanized>fastq-dump --split-files -gzip "G:\africanized\SRR3654621.sra" 2017-01-03T06:55:44 fastq-dump.2.3.4 err: column undefined while opening cursor within virtual database module - failed to resolve column 'READ' idx '1' 2017-01-03T06:55:44 fastq-dump.2.3.4 err: column not found while opening table within short read archive module - failed /G/africanized/SRR3654621.sra

============================================================= An error occurred during processing. A report was generated into the file 'C:\Users\mra/ncbi_error_report.xml'. If the problem persists, you may consider sending the file


rna-seq • 1.5k views
ADD COMMENTlink modified 2.1 years ago by huangziyan111110 • written 3.4 years ago by mra818720

Before digging into it, upgrade to the current version, which is 2.8.2 or something. Yours is quiet outdated.

ADD REPLYlink written 2.1 years ago by ATpoint34k
gravatar for huangziyan11111
2.1 years ago by
huangziyan111110 wrote:

I meet the same problem, have you solved it?

ADD COMMENTlink written 2.1 years ago by huangziyan111110

ya i solved it by using newest version

ADD REPLYlink written 2.1 years ago by mra818720
Please log in to add an answer.


Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 927 users visited in the last hour