Question: error in convert srt to fastq
0
gravatar for mra8187
2.2 years ago by
mra818720
mra818720 wrote:

Dear all when i try to convert srt to fastq see this error .. what can i do ? (i Command Prompt in windows 10)

G:\africanized>fastq-dump --split-files -gzip "G:\africanized\SRR3654621.sra" 2017-01-03T06:55:44 fastq-dump.2.3.4 err: column undefined while opening cursor within virtual database module - failed to resolve column 'READ' idx '1' 2017-01-03T06:55:44 fastq-dump.2.3.4 err: column not found while opening table within short read archive module - failed /G/africanized/SRR3654621.sra

============================================================= An error occurred during processing. A report was generated into the file 'C:\Users\mra/ncbi_error_report.xml'. If the problem persists, you may consider sending the file

=============================================================

rna-seq • 1.1k views
ADD COMMENTlink modified 11 months ago by huangziyan111110 • written 2.2 years ago by mra818720

Before digging into it, upgrade to the current version, which is 2.8.2 or something. Yours is quiet outdated.

ADD REPLYlink written 11 months ago by ATpoint14k
0
gravatar for huangziyan11111
11 months ago by
China
huangziyan111110 wrote:

I meet the same problem, have you solved it?

ADD COMMENTlink written 11 months ago by huangziyan111110

ya i solved it by using newest version

ADD REPLYlink written 11 months ago by mra818720
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