which is the best way to do phylogenetic analysis from SRA viral data?

Question

[KIRA]

I am new on this field of NGS so would like to know more.Guide me on the right path.

Answer 1

[Medhat]

I think you should begin with something with GUI try first to read about this tools and the method it uses for phylogenetic analysis http://megasoftware.net/

here is an example of phylogenetic analysis using MEGA

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4125191/

lastly I would like you to read this chapter

Analysis of Next-generation Sequencing Data in Virology - Opportunities and Challenges

[KIRA]

Thank u for the help