How to download a whole ICGC release of processed data?
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Entering edit mode
4.8 years ago

The ICGC moved from FTP access to their new data portal where they provide releases of the processed data:

https://dcc.icgc.org/releases/release_23

How can I download the whole release?

A machine readable collection of all links is not available, wget doesn't do it because it's Java-script based and opening the page with PhantomJS gives an error as well.

icgc download • 2.7k views
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11
Entering edit mode
4.8 years ago

I wrote a script that seems to do it reasonably well:

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