Question: A Heatmap based on RPKM values of log2fold change?
gravatar for Mehmet
2.4 years ago by
Mehmet460 wrote:

Dear All;

I would like to ask you a question. ( I searched on the internet and here, but I could not find a good explanation).

I have a list of differentially expressed genes, and their GFOLD values with RPKM values. Briefly, I have two species and I run GFOLD for differential gene expressed analysis. GFOLD produced a table containing up and down regulated genes with their RPKM values. Then, I selected up and down regulated genes based GFOLD values. Now I want to make a heatmap. Can RPKM values of each up and down regulated genes be used in heatmap in R after making a matrix using RPKM values?

Thank you.

rna-seq R gene • 990 views
ADD COMMENTlink written 2.4 years ago by Mehmet460
Please log in to add an answer.


Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 738 users visited in the last hour