Question: CONVERT GFF TO GTF
0
gravatar for Bioinfonext
2.7 years ago by
Bioinfonext160
Korea
Bioinfonext160 wrote:

I am trying to use Hisat2 script to extract exon and splice site using this GFF File from this database named as Rs.1.0 Gene

link: http://radish-genome.org/Data_resource/

But these scripts need GTF file,please suggest how I convert GFF file to GTF file.

$extract_exon.py $extract_splice_sites.py

rna-seq • 3.1k views
ADD COMMENTlink modified 2.7 years ago by Jeffin Rockey1.1k • written 2.7 years ago by Bioinfonext160
1
gravatar for Satyajeet Khare
2.7 years ago by
Satyajeet Khare1.5k
Pune, India
Satyajeet Khare1.5k wrote:

You can use gffread

gffread gene.gff -T -o gene.gtf
ADD COMMENTlink modified 2.7 years ago • written 2.7 years ago by Satyajeet Khare1.5k
0
gravatar for Jeffin Rockey
2.7 years ago by
Jeffin Rockey1.1k
Karimannoor
Jeffin Rockey1.1k wrote:

I hope the answers of this post will help you with the requirement.

ADD COMMENTlink written 2.7 years ago by Jeffin Rockey1.1k
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