CONVERT GFF TO GTF

Question

[Bioinfonext]

I am trying to use Hisat2 script to extract exon and splice site using this GFF File from this database named as Rs.1.0 Gene

link: http://radish-genome.org/Data_resource/

But these scripts need GTF file,please suggest how I convert GFF file to GTF file.

$extract_exon.py $extract_splice_sites.py

Answer 1

[Satyajeet Khare]

You can use gffread

gffread gene.gff -T -o gene.gtf

Answer 2

[Jeffin Rockey]

I hope the answers of this post will help you with the requirement.