Question: Compare genome of eight mycobacterial strain using ACT
0
gravatar for ppawar
2.3 years ago by
ppawar0
ppawar0 wrote:

Hi,

I am doing my research my research on Mycobacterium tuberculosis. Can I use ACT (Artemis Comparison Tool) from the Sanger institute for comparative analysis of eight Mycobacterial strain.

Cheers.

ADD COMMENTlink modified 2.3 years ago by bioinfo1730 • written 2.3 years ago by ppawar0
0
gravatar for vmicrobio
2.3 years ago by
vmicrobio240
vmicrobio240 wrote:

ACT is interesting to highlight similar and different regions between genomes. Also, it depend on what you are looking for and what are the data you are working on For whole genome comparison, I would recommend MUMmer and Mauve. mVista is also an option for pairwise genome comparison.

ADD COMMENTlink written 2.3 years ago by vmicrobio240
0
gravatar for bioinfo17
2.3 years ago by
bioinfo1730
bioinfo1730 wrote:

Also try EDGAR for whole genome comparisons.

ADD COMMENTlink written 2.3 years ago by bioinfo1730
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1859 users visited in the last hour