Question: NCBI : Obtain "gene symbol" and fasta sequence from locus_tag list
0
gravatar for fanny.marquer
2.2 years ago by
fanny.marquer0 wrote:

Hi,

i have a list of locus_tag such as CGI_10028029 and i would like to obtain gene and fasta sequence for each locus_tag. i don't know how to do it automatically.

Thanks

locus_tag gene symbol ncbi • 1.2k views
ADD COMMENTlink modified 2.2 years ago by Sej Modha4.2k • written 2.2 years ago by fanny.marquer0
0
gravatar for Sej Modha
2.2 years ago by
Sej Modha4.2k
Glasgow, UK
Sej Modha4.2k wrote:

You can use NCBI unix e-utils.

esearch -db gene -query "CGI_10028029"|elink -target nuccore|efetch -format fasta
ADD COMMENTlink written 2.2 years ago by Sej Modha4.2k
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