Imputation and phasing of one sample at a time or all samples together ?
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4.6 years ago
ElCascador ▴ 20

Hi,

Is there any benefits of phasing haplotypes for all your samples instead of doing it sample by samples ? Doing it per individual basis helps with computation type by helping parallelise.

I'm using SHAPEIT and IMPUTE2 and I don't see what benefit it would bring doing it with all my samples at a time.

Thanks

Imputation IMPUTE2 SHAPEIT • 1.3k views
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I also see no advantage to doing phasing with multiple samples at once unless they're related and the program is told how they are related.

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