Question: Uniprot activ site annotate on intronic region?
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gravatar for cristina_sabiers
2.5 years ago by
Spain
cristina_sabiers60 wrote:

mmm I dont know if I do something wrong but...

this is from data base of uniprot_:

chr11 4123342 4123345 P23921 0 + 4123342 4123345 255,102,102 1 3 0 . Proton acceptor.

ftp://ftp.uniprot.org/pub/databases/uniprot/current_release/knowledgebase/genome_annotation_tracks/UP000005640_9606_beds/UP000005640_9606_act_site.bed

I had been working annotate the activ site to my exome genome secuency, my surprise was to get this:

chr11 4123345 . C G 463.337 PASS AF=1;AO=51;DP=51;FAO=49;FDP=49;FR=.;FRO=0;FSAF=25;FSAR=24;FSRF=0;FSRR=0;FWDB=-0.00950073;FXX=0.039208;HRUN=1;LEN=1;MLLD=70.9911;OALT=G;OID=.;OMAPALT=G;OPOS=4123345;OREF=C;PB=0.5;PBP=1;QD=37.8234;RBI=0.0557591;REFB=0;REVB=0.0549437;RO=0;SAF=27;SAR=24;SRF=0;SRR=0;SSEN=0;SSEP=0;SSSB=0;STB=0.5;STBP=1;TYPE=snp;VARB=0.000627396;FUNC=[{'transcript':'NM_001033.3','gene':'RRM1','location':'intronic'}];ACTIVSITE=Proton acceptor. GT:GQ:DP:FDP:RO:FRO:AO:FAO:AF:SAR:SAF:SRF:SRR:FSAR:FSAF:FSRF:FSRR

Intronic???? shouldn't be all exonic the annotations? If someone can explain me I would appreciate it.

Thanks

uniptrot • 535 views
ADD COMMENTlink modified 2.5 years ago • written 2.5 years ago by cristina_sabiers60
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