Extract Certain Info From Multiple Files In Genbank Format
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12.5 years ago
Redse ▴ 30

hi,

i'm new in bioinformatics and python. my first project is to extract /gene, /product, /locustag and /ECnumber qualifiers info from Genbank file. i need the info for all these qualifiers only and save them in 1 specific file. is there any specific script to do this? thanks..

python • 4.3k views
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Hi,

thanks guys...will look into those links right now..

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12.5 years ago

This should be easily doable using BioPython. I have not used it much myself, but take a look at the examples here.

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Ha, I think we posted answers with the exact same links within seconds of each other :)

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I was the first one ! ;-) I was the first one ! I was the first one ! Vote for me ! Vote for me ! Vote for me ! :-))

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12.5 years ago
Paulo Nuin ★ 3.7k

You can definitely use the BioPython approach, but if you want to take a look a "raw" python way check this out.

You can modify the code to fit your needs.

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