Tool:deepTools2 : User-friendly tools for exploring deep-sequencing data
Entering edit mode
6.1 years ago
vivekbhr ▴ 680

Although it was released last year, deepTools2 has not been formally introduced to the biostars community yet.

deepTools is a set of command line / galaxy tools for QC, normalization and visualization of sequencing data

deepTools addresses the challenge of handling the large amounts of data that are now routinely generated from DNA sequencing centers. deepTools contains useful modules to process the mapped reads data for multiple quality checks, creating normalized coverage files in standard bedGraph and bigWig file formats, that allow comparison between different files (for example, treatment and control). Finally, using such normalized and standardized files, deepTools can create many publication-ready visualizations to identify enrichments and for functional annotations of the genome.

Publication :

Documentation :

Galaxy : , Also a part of

Code :

Biostars : #deeptools

Lead authors are quite active on biostars (especially Devon Ryan).


RNA-Seq ChIP-Seq next-gen Tool deeptools • 2.2k views

Login before adding your answer.

Traffic: 2002 users visited in the last hour
Help About
Access RSS

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6