Tool: deepTools2 : User-friendly tools for exploring deep-sequencing data
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gravatar for vivekbhr
4.1 years ago by
vivekbhr630
Germany
vivekbhr630 wrote:

Although it was released last year, deepTools2 has not been formally introduced to the biostars community yet.

deepTools is a set of command line / galaxy tools for QC, normalization and visualization of sequencing data

deepTools addresses the challenge of handling the large amounts of data that are now routinely generated from DNA sequencing centers. deepTools contains useful modules to process the mapped reads data for multiple quality checks, creating normalized coverage files in standard bedGraph and bigWig file formats, that allow comparison between different files (for example, treatment and control). Finally, using such normalized and standardized files, deepTools can create many publication-ready visualizations to identify enrichments and for functional annotations of the genome.

Publication : https://doi.org/10.1093/nar/gkw257

Documentation : http://deeptools.readthedocs.io/en/latest/

Galaxy : http://galaxy.ie-freiburg.mpg.de , Also a part of https://usegalaxy.org/

Code : https://github.com/fidelram/deepTools

Biostars : #deeptools

Lead authors are quite active on biostars (especially Devon Ryan).

deepTools2

ADD COMMENTlink modified 4.1 years ago by Devon Ryan98k • written 4.1 years ago by vivekbhr630
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