Question: Extract common TFBS from a list of genes
gravatar for sofia.figueiredo
22 months ago by
sofia.figueiredo0 wrote:

Dear BioStars Community,

I have a list of genes and I want to know if they have, in their promotor regions, any transcription factor binding sites in common. Do you know the best way to tackle this problem? How can I automatically extract the promotor regions of these genes and retrieve their TFBS? I will be happy to solve this problem either in R or using any web-based tool.

TIA, Sofia

ADD COMMENTlink modified 22 months ago by WouterDeCoster35k • written 22 months ago by sofia.figueiredo0
gravatar for WouterDeCoster
22 months ago by
WouterDeCoster35k wrote:

Enrichr can do stuff like that.

ADD COMMENTlink written 22 months ago by WouterDeCoster35k

Thanks. Works perfectly! Sofia

ADD REPLYlink written 21 months ago by sofia.figueiredo0
Please log in to add an answer.


Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1057 users visited in the last hour