Question: Extract common TFBS from a list of genes
gravatar for sofia.figueiredo
10 weeks ago by
sofia.figueiredo0 wrote:

Dear BioStars Community,

I have a list of genes and I want to know if they have, in their promotor regions, any transcription factor binding sites in common. Do you know the best way to tackle this problem? How can I automatically extract the promotor regions of these genes and retrieve their TFBS? I will be happy to solve this problem either in R or using any web-based tool.

TIA, Sofia

ADD COMMENTlink modified 10 weeks ago by WouterDeCoster16k • written 10 weeks ago by sofia.figueiredo0
gravatar for WouterDeCoster
10 weeks ago by
WouterDeCoster16k wrote:

Enrichr can do stuff like that.

ADD COMMENTlink written 10 weeks ago by WouterDeCoster16k

Thanks. Works perfectly! Sofia

ADD REPLYlink written 9 weeks ago by sofia.figueiredo0
Please log in to add an answer.


Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 735 users visited in the last hour