I have a DeSeq2 output file generated by an external RNA-seq. So the output is the usual has the usual columns: gene identifiers, baseMean, log2FoldChange, lfcSE stat, pvalue, padj. However, I want to perform rlog or varianceStabilizingTransformation on my data. Is there a way to do this transformation just using the output file above? When I go back and perform the DeSeq2 analysis on my counts, there are differences between my output and the one given to me by the company. So I would like to use the output file.
Question: DeSeq2 rlog or varianceStabilizingTransformation using ouput file
2.8 years ago by
BM • 40
BM • 40 wrote:
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