Question: human geneome alignment RNAseq
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gravatar for joerodger2017
2.3 years ago by
joerodger201720 wrote:

I have an RNA-seq data and am trying to calculate how many read align to rRNA where can I find the file of rRNA gene to align any other pointer?

rna-seq • 659 views
ADD COMMENTlink modified 2.3 years ago by shunyip180 • written 2.3 years ago by joerodger201720
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gravatar for genomax
2.3 years ago by
genomax68k
United States
genomax68k wrote:

Take a look at this post: A: entire human rDNA

ADD COMMENTlink written 2.3 years ago by genomax68k
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gravatar for shunyip
2.3 years ago by
shunyip180
shunyip180 wrote:

This teaches you how to create a gene annotation file with rRNA in it.

In short, in UCSC table browser, choose "All Tables" under "group" and choose "rmsk" under "table".

ADD COMMENTlink written 2.3 years ago by shunyip180
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