human geneome alignment RNAseq

Question

[joerodger2017]

I have an RNA-seq data and am trying to calculate how many read align to rRNA where can I find the file of rRNA gene to align any other pointer?

Answer 1

[GenoMax]

Take a look at this post: A: entire human rDNA

Answer 2

[shunyip]

This teaches you how to create a gene annotation file with rRNA in it.

In short, in UCSC table browser, choose "All Tables" under "group" and choose "rmsk" under "table".