Question: variant calling using reference transcriptome
gravatar for prasundutta87
21 months ago by
prasundutta87280 wrote:


Is there any tool which uses a reference transcriptome to call variants instead of a reference genome ? I will also like to use the reference transcriptome for variant annotation as well and would like to know if any variant annotation tools allows that. I did not find any tool optimised to work with a reference transcriptome for the above two jobs. Any help or suggestions are welcome.

(P.S. I have RNAseq reads to call variants from)

ADD COMMENTlink written 21 months ago by prasundutta87280
Please log in to add an answer.


Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1664 users visited in the last hour