Question: variant calling using reference transcriptome
1
gravatar for prasundutta87
15 months ago by
prasundutta87170
prasundutta87170 wrote:

Hi,

Is there any tool which uses a reference transcriptome to call variants instead of a reference genome ? I will also like to use the reference transcriptome for variant annotation as well and would like to know if any variant annotation tools allows that. I did not find any tool optimised to work with a reference transcriptome for the above two jobs. Any help or suggestions are welcome.

(P.S. I have RNAseq reads to call variants from)

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