Question: Difference Between Ncbi Build 36.3 And Ncbi Build 37.1?
4
gravatar for User 8357
10.5 years ago by
User 835740
User 835740 wrote:

What is difference between NCBI build 36.3 and NCBI build 37.1? Which build of NCBI is being used by ENSEMBL release 59 ?

ncbi genome • 9.3k views
ADD COMMENTlink modified 10.1 years ago by Jorge Amigo12k • written 10.5 years ago by User 835740
5
gravatar for biobot 0.0.77.a.1099
10.5 years ago by
UK
biobot 0.0.77.a.10996.1k wrote:

Differences between NCBI build 36.3 and NCBI build 37.1 may be found in the release notes.

Ensembl 59 uses GRCh37 which "is considered the next version of NCBI Build 36 (also known as hg18)".

ADD COMMENTlink written 10.5 years ago by biobot 0.0.77.a.10996.1k
3
gravatar for Mary
10.5 years ago by
Mary11k
Boston MA area
Mary11k wrote:

You can check out the release notes for the assemblies here: http://www.ncbi.nlm.nih.gov/genome/guide/human/release_notes.html

See the notes on Ensembl 59 here: http://uswest.ensembl.org/Homo_sapiens/Info/Index

(Off topic note: is anyone else's favicon for ensembl backwards? Or is it just me? Or is it just the US site and it's some kind of insult ;) ?

ADD COMMENTlink written 10.5 years ago by Mary11k

Yes, it's backwards on the US site. Presumably an antipodean mirror will have it upside down.

ADD REPLYlink written 10.5 years ago by biobot 0.0.77.a.10996.1k

Aussies--NZ--Africa--South America? Anyone got a mirror? What do you see? Heh.

ADD REPLYlink written 10.5 years ago by Mary11k
3
gravatar for Jorge Amigo
10.5 years ago by
Jorge Amigo12k
Santiago de Compostela, Spain
Jorge Amigo12k wrote:

for any of you interested in working with Ensembl data mapped to the previous human reference NCBI36/hg18, now that it has been clearly stated here that Ensembl59 uses GRCh37/NCBI37/hg19, the latest version would be Ensembl54. It can be found browsing their archive site, a great resource for people still dealing with old mapped data.

ADD COMMENTlink written 10.5 years ago by Jorge Amigo12k
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