Question: How to download BCL files from NextSeq run?
0
gravatar for Joe
5 weeks ago by
Joe10
USA
Joe10 wrote:

Hi I'm new to the NGS data analysis, want to practice how to use bcl2fastq to demultiplex a nextseq run.

I have a run from Nextseq few weeks ago (with Basespace, didn't do standalone). Try to download BCL for this run, but I can only download fastq from basespace.illumina.com. I can see the output folder in the basespace, but can only download files one buy one.

My questions are:

1, how to download bulk BCL files from basespace?

2, As I know nextseq only keep the most recent run folder in D:\Illumina\NextSeq Control Software\Temp. But for old runs, if I didn't run standalone , does that means I don't have the output folder in the Nextseq machine, and the output folders are only on Basespace?

Thanks!

sequencing bcl2fastq nextseq • 104 views
ADD COMMENTlink modified 4 weeks ago • written 5 weeks ago by Joe10
1
gravatar for Joe
4 weeks ago by
Joe10
USA
Joe10 wrote:

I can answer my own question now. Use basemount.

ADD COMMENTlink written 4 weeks ago by Joe10
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1103 users visited in the last hour