Question: maker with augusuts / utr=off
gravatar for Nastasiia
2.5 years ago by
Nastasiia 10
Nastasiia 10 wrote:

I am running Maker with augustus as gene predictor and noticed that at err output augustus 'command' is set up not to predict UTRs like here:

running augustus.

--------- command -------------

Widget::augustus: ~/soft/augustus-3.2.2/bin/augustus --species=phaeod --strand=backward --UTR=off --hintsfile=....

Is it usual for Maker to predict UTRs from evidences by itself without augustus 'hints'?

I changed parameters in species_parameters.cfg to 'UTR on' as well.

Thanks, Nastya

ADD COMMENTlink modified 2.5 years ago • written 2.5 years ago by Nastasiia 10
Please log in to add an answer.


Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 2125 users visited in the last hour