Question: maker with augusuts / utr=off
gravatar for Nastasiia
8 days ago by
Nastasiia 10
Nastasiia 10 wrote:

I am running Maker with augustus as gene predictor and noticed that at err output augustus 'command' is set up not to predict UTRs like here:

running augustus.

--------- command -------------

Widget::augustus: ~/soft/augustus-3.2.2/bin/augustus --species=phaeod --strand=backward --UTR=off --hintsfile=....

Is it usual for Maker to predict UTRs from evidences by itself without augustus 'hints'?

I changed parameters in species_parameters.cfg to 'UTR on' as well.

Thanks, Nastya

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