Is there a way to extract instrument and flowcell from a read name like this:
>gnl|SRA|SRR1840614.1.1 FCC1KPRACXX:1:1101:1291:2172 FCC1KPRACXX : what is this? 1 = lane? 1101 = ? 1291 = x 2172 = y
I need to extract the flowcell if possible, so it can be assigned to reads downstream in a sam file read-group tag.