I'm doing project research about prediction of limited proteolysis from structure and sequence using a clasifier . What is the best classifier that I can use other than SVM and Random forest? I'm using dataset from MEROPS.
There's no best classifier as it depends on how you approach the problem. What you should be asking instead is: what is the best prediction accuracy obtained so far and how was it achieved ? For this you'll probably have to read papers on the subject to know what has been tried and get an idea in which direction to look for improvement.
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