Classifier for Prediction of limited proteolysis from protein structure and sequence.

Question

[Student]

I'm doing project research about prediction of limited proteolysis from structure and sequence using a clasifier . What is the best classifier that I can use other than SVM and Random forest? I'm using dataset from MEROPS.

[Jean-Karim Heriche]

There's no best classifier as it depends on how you approach the problem. What you should be asking instead is: what is the best prediction accuracy obtained so far and how was it achieved ? For this you'll probably have to read papers on the subject to know what has been tried and get an idea in which direction to look for improvement.