Extract transcript from genome guided assembly based on class code using gffread

Question

[Bioinfonext]

Hi,

I used CuffCompare to compare the genome guided assembled GTF file with the genome annotation. Now I want to extract transcripts with class codes annotated with “u”, “x,” and “i” using gffread program.

Please share command line to extract these transcripts.

Thanks

[st.ph.n]

Familiarize yourself with gffread, try something, if it doesn't work, post your command, and come back with the error.