Question

Assembling sequence data generated by RADseq

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7.1 years ago

shynilasanthi ▴ 40

Hi I'm working on a project where I have to assemble sequences generated by RADseq.When I was looking for a tool or pipeline I got to know about Stacks pipeline.I would like to know if there are any other tools or pipelines that I can use for assembling my data

next-gen Assembly Stack pipeline • 1.5k views

ADD COMMENT • link updated 7.1 years ago by h.mon 35k • written 7.1 years ago by shynilasanthi ▴ 40

score 2 · Answer 1 · 2017-04-02

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7.1 years ago

Rohit ★ 1.5k

Rainbow might be a good try

ADD COMMENT • link 7.1 years ago by Rohit ★ 1.5k

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Thank you Rohit. I'll check that out

ADD REPLY • link 7.1 years ago by shynilasanthi ▴ 40

score 0 · Answer 2 · 2017-04-02

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7.1 years ago

h.mon 35k

There is a good number of tools available: pyRAD, dDocent, AftrRAD, just to name a few.

ADD COMMENT • link 7.1 years ago by h.mon 35k