Difference between UCSC browser and dbSNP sequence.
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7.0 years ago
fetus0000 ▴ 20

Hello, I have a question regarding discrepancy between UCSC table browser sequence and dbSNP FASTA sequence. I queried for table browser for 3'-UTR, and get FASTA sequence. I also queried for dbSNP for SNP in 3'-UTR, and FASTA sequence is different from one from table browser. How can this difference occur? Thanks in advance.

SNP sequence • 1.3k views
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It would help if you would be more precise. How different? What's different?

Did you make sure to use the same genome build in your two queries?

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Thanks for the help, my mis-understanding of displaying 5' -> 3' and how the transcription works, and now i understand.

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