Question: Difference between UCSC browser and dbSNP sequence.
0
gravatar for fetus0000
3.0 years ago by
fetus000020
fetus000020 wrote:

Hello, I have a question regarding discrepancy between UCSC table browser sequence and dbSNP FASTA sequence. I queried for table browser for 3'-UTR, and get FASTA sequence. I also queried for dbSNP for SNP in 3'-UTR, and FASTA sequence is different from one from table browser. How can this difference occur? Thanks in advance.

snp sequence • 738 views
ADD COMMENTlink written 3.0 years ago by fetus000020
2

It would help if you would be more precise. How different? What's different?

Did you make sure to use the same genome build in your two queries?

ADD REPLYlink written 3.0 years ago by WouterDeCoster43k

Thanks for the help, my mis-understanding of displaying 5' -> 3' and how the transcription works, and now i understand.

ADD REPLYlink written 3.0 years ago by fetus000020
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 2130 users visited in the last hour