Question: How to download tsa sequences from BioProject ID and saving it in fasta format?
1
gravatar for AsoInfo
23 months ago by
AsoInfo220
Bonn, Germany
AsoInfo220 wrote:

Hi,

I want to download sequences of TSA by the specific BioProject id and save it seperately. I am using following command:

esearch -db nuccore -query "381307[BioProject] AND tsa master[prop]"  | elink -target nuccore -name nuccore_nuccore_mstr2mbr | efetch -format fasta

I would like to save the files with their corresponding names. (As far as I think, the command will give me the required result as I am new to eutils).

Thanks!

tsa nucleotide fasta • 774 views
ADD COMMENTlink modified 6 months ago by Biostar ♦♦ 20 • written 23 months ago by AsoInfo220
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